Downloads

This page contains download links to the protocols, software, libraries, databases, and omics data we developed in our lab. Click on the research link to learn more about these data and tools. Please cite the relevant links or articles if you use any data or tools from this page. Contact us if you have any problems with download files.

Protocols

FileTypeDescription
GCMS Protocol 1mgDOCXGC-MS metabolomics protocol for 1 mg of sample tissue
GCMS Protocol 6mgDOCXGC-MS metabolomics protocol for 6 mg of sample tissue
LCMS ProtocolDOCXLC-MS metabolomics protocol

Software

TitleTypeDescription
MET-IDEA v2.08EXEThe improved version of MET-IDEA includes new visualization of peak integrations, display of mass spectra associated with integrated peaks, and optional manual peak integration. Learn more.
PlantMAT v1XLSBPlantMAT (Plant Metabolite Annotation Toolbox) uses LC-MSMS data and informed phytochemical knowledge for the prediction of plant natural products such as saponins and glycosylated flavonoids through combinatorial enumeration of aglycone, glycosyl, and acyl subunits. Learn more.
MetExpert v1XLSBMetExpert is a metabolite expert system to assist users with limited expertise in informatics to interpret GCMS data for metabolite identification without querying spectral databases. It employs machine learning techniques for the prediction of retention indices and molecular substructures. It prioritizes the candidate molecules using orthogonal dataset through a streamlined, automated pipeline. Learn more.

Libraries/Databases

TitleTypeDescription
Plant Natural Product LibraryPCDLThe Agilent PCDL library contains 1734 tandem mass spectra for 289 compounds, with 76% of the compounds being plant phenolics such as flavonoids, isoflavonoids, and phenylpropanoids. Tandem mass spectra and chromatographic retention data were acquired on an Agilent Infinity 1290 UHPLC system coupled to an Agilent 6430 triple quadrupole mass spectrometer using six different collision energies (10–60 eV). Learn more.
Plant Natural Product LibraryLibraryThe MetaboBASE Plant Library contains around 1,000 MS/MS spectra of secondary plant metabolites and was created in collaboration with Bruker Daltonics.

Data

Download LinkFile TypeData Description
Vieira-Potter et al, Nature’s Scientific Reports, May 2018.ZIPRaw and Processed data in zip file format for Vieira-Potter et al, Nature’s Scientific Reports, May 2018.
File 1 of 14, Lei et al, Frontiers Plant Science, 2019ZIPFile 1 of 14, Raw and Processed data in zip file format Lei_etal,FrontiersPlantSciences,2019,10,850,1-12
File 2 of 14, Lei et al, Frontiers Plant Science, 2019ZIPFile 2 of 14, Raw and Processed data in zip file format Lei_etal,FrontiersPlantSciences,2019,10,850,1-12
File 3 of 14, Lei et al, Frontiers Plant Science, 2019ZIPFile 3 of 14, Raw and Processed data in zip file format Lei_etal,FrontiersPlantSciences,2019,10,850,1-12
File 4 of 14, Lei et al, Frontiers Plant Science, 2019ZIPFile 4 of 14, Raw and Processed data in zip file format Lei_etal,FrontiersPlantSciences,2019,10,850,1-12
File 5 of 14, Lei et al, Frontiers Plant Science, 2019ZIPFile 5 of 14, Raw and Processed data in zip file format Lei_etal,FrontiersPlantSciences,2019,10,850,1-12
File 6 of 14, Lei et al, Frontiers Plant Science, 2019ZIPFile 6 of 14, Raw and Processed data in zip file format Lei_etal,FrontiersPlantSciences,2019,10,850,1-12
File 7 of 14, Lei et al, Frontiers Plant Science, 2019ZIPFile 7 of 14, Raw and Processed data in zip file format Lei_etal,FrontiersPlantSciences,2019,10,850,1-12
File 8 of 14, Lei et al, Frontiers Plant Science, 2019ZIPFile 8 of 14, Raw and Processed data in zip file format Lei_etal,FrontiersPlantSciences,2019,10,850,1-12
File 9 of 14, Lei et al, Frontiers Plant Science, 2019ZIPFile 9 of 14, Raw and Processed data in zip file format Lei_etal,FrontiersPlantSciences,2019,10,850,1-12
File 10 of 14, Lei et al, Frontiers Plant Science, 2019ZIPFile 10 of 14, Raw and Processed data in zip file format Lei_etal,FrontiersPlantSciences,2019,10,850,1-12
File 11 of 14, Lei et al, Frontiers Plant Science, 2019ZIPFile 11 of 14, Raw and Processed data in zip file format Lei_etal,FrontiersPlantSciences,2019,10,850,1-12
File 12 of 14, Lei et al, Frontiers Plant Science, 2019ZIPFile 12 of 14, Raw and Processed data in zip file format Lei_etal,FrontiersPlantSciences,2019,10,850,1-12
File 13 of 14, Lei et al, Frontiers Plant Science, 2019ZIPFile 13 of 14, Raw and Processed data in zip file format Lei_etal,FrontiersPlantSciences,2019,10,850,1-12
File 14 of 14, Lei et al, Frontiers Plant Science, 2019ZIPFile 14 of 14, Raw and Processed data in zip file format Lei_etal,FrontiersPlantSciences,2019,10,850,1-12
Kaur et al, Microbiome, 2019, resubmitted.ExcelMetadata for Kaur et al, Microbiome, 2019, resubmitted.
Kaur et al, Microbiome, 2019, resubmitted.ZIPRaw GC-MS data files for Kaur et al, Microbiome, 2019, resubmitted.
Kaur et al, Microbiome, 2019, resubmitted.ZIPRaw LC-MS data files for F-AIN group, Kaur et al, Microbiome, 2019, resubmited
Kaur et al, Microbiome, 2019, resubmitted.ZIPRaw LC-MS data files for F-GEN group, Kaur et al, Microbiome, 2019, resubmited
Kaur et al, Microbiome, 2019, resubmitted.ZIPRaw LC-MS data files for F-HDBPA group, Kaur et al, Microbiome, 2019, resubmited
Kaur et al, Microbiome, 2019, resubmitted.ZIPRaw LC-MS data files for F-LDBPA group, Kaur et al, Microbiome, 2019, resubmited
Kaur et al, Microbiome, 2019, resubmitted.ZIPRaw LC-MS data files for M-AIN group, Kaur et al, Microbiome, 2019, resubmited
Kaur et al, Microbiome, 2019, resubmitted.ZIPRaw LC-MS data files for M-GEN group, Kaur et al, Microbiome, 2019, resubmited
Kaur et al, Microbiome, 2019, resubmitted.ZIPRaw LC-MS data files for M-HDBPA group, Kaur et al, Microbiome, 2019, resubmited
Kaur et al, Microbiome, 2019, resubmitted.ZIPRaw LC-MS data files for M-LDBPA group, Kaur et al, Microbiome, 2019, resubmited
Mao et al, Proc. Natl. Acad. Sci. U.S.A., 2020.ZIPRaw GC-MS data files for Mao et al, Proc. Natl. Acad. Sci. U.S.A., 2020