This page contains download links to the protocols, software, libraries, databases, and omics data we developed in our lab. Click on the research link to learn more about these data and tools. Please cite the relevant links or articles if you use any data or tools from this page. Contact us if you have any problems with download files.
Protocols
| File | Type | Description |
|---|---|---|
| GCMS Protocol 1mg | DOCX | GC-MS metabolomics protocol for 1 mg of sample tissue |
| GCMS Protocol 6mg | DOCX | GC-MS metabolomics protocol for 6 mg of sample tissue |
| LCMS Protocol | DOCX | LC-MS metabolomics protocol |
Software
| Title | Type | Description |
|---|---|---|
| MET-IDEA v2.08 | EXE | The improved version of MET-IDEA includes new visualization of peak integrations, display of mass spectra associated with integrated peaks, and optional manual peak integration. Learn more. |
| PlantMAT v1 | XLSB | PlantMAT (Plant Metabolite Annotation Toolbox) uses LC-MSMS data and informed phytochemical knowledge for the prediction of plant natural products such as saponins and glycosylated flavonoids through combinatorial enumeration of aglycone, glycosyl, and acyl subunits. Learn more. |
| MetExpert v1 | XLSB | MetExpert is a metabolite expert system to assist users with limited expertise in informatics to interpret GCMS data for metabolite identification without querying spectral databases. It employs machine learning techniques for the prediction of retention indices and molecular substructures. It prioritizes the candidate molecules using orthogonal dataset through a streamlined, automated pipeline. Learn more. |
Libraries/Databases
| Title | Type | Description |
|---|---|---|
| Plant Natural Product Library | PCDL | The Agilent PCDL library contains 1734 tandem mass spectra for 289 compounds, with 76% of the compounds being plant phenolics such as flavonoids, isoflavonoids, and phenylpropanoids. Tandem mass spectra and chromatographic retention data were acquired on an Agilent Infinity 1290 UHPLC system coupled to an Agilent 6430 triple quadrupole mass spectrometer using six different collision energies (10–60 eV). Learn more. |
| Plant Natural Product Library | Library | The MetaboBASE Plant Library contains around 1,000 MS/MS spectra of secondary plant metabolites and was created in collaboration with Bruker Daltonics. |
Data
| Download Link | File Type | Data Description |
|---|---|---|
| Vieira-Potter et al, Nature’s Scientific Reports, May 2018. | ZIP | Raw and Processed data in zip file format for Vieira-Potter et al, Nature’s Scientific Reports, May 2018. |
| File 1 of 14, Lei et al, Frontiers Plant Science, 2019 | ZIP | File 1 of 14, Raw and Processed data in zip file format Lei_etal,FrontiersPlantSciences,2019,10,850,1-12 |
| File 2 of 14, Lei et al, Frontiers Plant Science, 2019 | ZIP | File 2 of 14, Raw and Processed data in zip file format Lei_etal,FrontiersPlantSciences,2019,10,850,1-12 |
| File 3 of 14, Lei et al, Frontiers Plant Science, 2019 | ZIP | File 3 of 14, Raw and Processed data in zip file format Lei_etal,FrontiersPlantSciences,2019,10,850,1-12 |
| File 4 of 14, Lei et al, Frontiers Plant Science, 2019 | ZIP | File 4 of 14, Raw and Processed data in zip file format Lei_etal,FrontiersPlantSciences,2019,10,850,1-12 |
| File 5 of 14, Lei et al, Frontiers Plant Science, 2019 | ZIP | File 5 of 14, Raw and Processed data in zip file format Lei_etal,FrontiersPlantSciences,2019,10,850,1-12 |
| File 6 of 14, Lei et al, Frontiers Plant Science, 2019 | ZIP | File 6 of 14, Raw and Processed data in zip file format Lei_etal,FrontiersPlantSciences,2019,10,850,1-12 |
| File 7 of 14, Lei et al, Frontiers Plant Science, 2019 | ZIP | File 7 of 14, Raw and Processed data in zip file format Lei_etal,FrontiersPlantSciences,2019,10,850,1-12 |
| File 8 of 14, Lei et al, Frontiers Plant Science, 2019 | ZIP | File 8 of 14, Raw and Processed data in zip file format Lei_etal,FrontiersPlantSciences,2019,10,850,1-12 |
| File 9 of 14, Lei et al, Frontiers Plant Science, 2019 | ZIP | File 9 of 14, Raw and Processed data in zip file format Lei_etal,FrontiersPlantSciences,2019,10,850,1-12 |
| File 10 of 14, Lei et al, Frontiers Plant Science, 2019 | ZIP | File 10 of 14, Raw and Processed data in zip file format Lei_etal,FrontiersPlantSciences,2019,10,850,1-12 |
| File 11 of 14, Lei et al, Frontiers Plant Science, 2019 | ZIP | File 11 of 14, Raw and Processed data in zip file format Lei_etal,FrontiersPlantSciences,2019,10,850,1-12 |
| File 12 of 14, Lei et al, Frontiers Plant Science, 2019 | ZIP | File 12 of 14, Raw and Processed data in zip file format Lei_etal,FrontiersPlantSciences,2019,10,850,1-12 |
| File 13 of 14, Lei et al, Frontiers Plant Science, 2019 | ZIP | File 13 of 14, Raw and Processed data in zip file format Lei_etal,FrontiersPlantSciences,2019,10,850,1-12 |
| File 14 of 14, Lei et al, Frontiers Plant Science, 2019 | ZIP | File 14 of 14, Raw and Processed data in zip file format Lei_etal,FrontiersPlantSciences,2019,10,850,1-12 |
| Kaur et al, Microbiome, 2019, resubmitted. | Excel | Metadata for Kaur et al, Microbiome, 2019, resubmitted. |
| Kaur et al, Microbiome, 2019, resubmitted. | ZIP | Raw GC-MS data files for Kaur et al, Microbiome, 2019, resubmitted. |
| Kaur et al, Microbiome, 2019, resubmitted. | ZIP | Raw LC-MS data files for F-AIN group, Kaur et al, Microbiome, 2019, resubmited |
| Kaur et al, Microbiome, 2019, resubmitted. | ZIP | Raw LC-MS data files for F-GEN group, Kaur et al, Microbiome, 2019, resubmited |
| Kaur et al, Microbiome, 2019, resubmitted. | ZIP | Raw LC-MS data files for F-HDBPA group, Kaur et al, Microbiome, 2019, resubmited |
| Kaur et al, Microbiome, 2019, resubmitted. | ZIP | Raw LC-MS data files for F-LDBPA group, Kaur et al, Microbiome, 2019, resubmited |
| Kaur et al, Microbiome, 2019, resubmitted. | ZIP | Raw LC-MS data files for M-AIN group, Kaur et al, Microbiome, 2019, resubmited |
| Kaur et al, Microbiome, 2019, resubmitted. | ZIP | Raw LC-MS data files for M-GEN group, Kaur et al, Microbiome, 2019, resubmited |
| Kaur et al, Microbiome, 2019, resubmitted. | ZIP | Raw LC-MS data files for M-HDBPA group, Kaur et al, Microbiome, 2019, resubmited |
| Kaur et al, Microbiome, 2019, resubmitted. | ZIP | Raw LC-MS data files for M-LDBPA group, Kaur et al, Microbiome, 2019, resubmited |
| Mao et al, Proc. Natl. Acad. Sci. U.S.A., 2020. | ZIP | Raw GC-MS data files for Mao et al, Proc. Natl. Acad. Sci. U.S.A., 2020 |